APEDA-CDFD, Centre for DNA Fingerprinting and Diagnostics, Hyderabad

APEDA - CDFD Centre for Basmati DNA analysis




Publications

In-house

  • Archak S, Nagaraju J (2007) Computational prediction of rice (Oryza sativa) miRNA targets. Genomics, Proteomics and Bioinformatics 5: 196-206. PDF

  • Lakshminarayanareddy V, Archak S, Nagaraju J (2007) Capillary electrophoresis is essential for microsatellite marker based detection and quantification of adulteration of Basmati rice (Oryza sativa). Journal of Agriculture and Food Chemistry 55: 8112-8117. PDF

  • Archak S, Lakshminarayanareddy V, Nagaraju J (2007) High-throughput multiplex microsatellite marker assay for detection and quantification of adulteration in Basmati rice (Oryza sativa). Electrophoresis 28: 2396-2405.PDF

  • Nagaraju J*, Kathirvel M, Kumar RR, Siddiq EA, Hasnain SE (2002) Genetic analysis of traditional and evolved Basmati and non-Basmati rice varieties by using fluorescence-based ISSR-PCR and SSR markers. Proceedings of the National Academy of Sciences USA 99: 5836-5841. PDF
    * Corresponding author

Related

  • Masouleh AK, Waters DLE, Reinke RF and Henry RJ (2009) A high-throughput assay for rapid and simultaneous analysis of perfect markers for important quality and agronomic traits in rice using multiplexed MALDI-TOF mass spectrometry. Plant Biotechnology Journal 7:355-363 PDF

  • Aggarwal RK, Shenoy VV Ramadevi J, Rajkumar R and Singh L (2002) Molecular characterization of some Indian Basmati and other elite rice genotypes using fluorescent-AFLP.Theor Appl Genet 105:680-690. PDF

  • Bligh HFJ (2000) Detection of adulteration of Basmati rice with non-premium long-grain rice. International Journal of Food Science & Technology 35: 257-265. PDF

  • Choudhury PR, Kohli S, Srinivasan K, Mohapatra T and Sharma RP (2001). Identification and classification of aromatic rices based on DNA Fingerprinting. Euphytica 118:243-251. PDF

  • Colyer A, Macarthur R, Lloyd J and Hird H (2008). Comparison of calibration methods for the quantification of Basmati and non-Basmati rice using microsatellite analysis. Food Additives and Contaminants 1-6. PDF

  • Garris AJ, Tai TH, Coburn J, Kresovich S and McCouch S (2005) Genetic structure and diversity in Oryza sativa L. Genetics 169: 1631‐1638. PDF

  • Glaszmann JC (1987) Isozymes and classification of Asian rice varieties. TAG Theoretical and Applied Genetics 74:21-30. PDF

  • Jain S, Jain RK and McCouch SR (2004) Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labelled microsatellite markers. Theor Appl Genet 109: 965-977. PDF

  • Kelly S, Baxter M, Chapman S, Rhodes C, Dennis J and Brereton P (2002) The application of isotopic and elemental analysis to determine the geographical origin of premium long grain rice. Eur Food Res Technol 214:72-78. PDF

  • Kelly S, Heaton K and Hoogewerff J (2005) Tracing the geographical origin of food: The application of multi-element and multi-isotope analysis Trends in Food Science & Technology 16:555-567. PDF

  • Lapitan VC, Brar DS, Abe T and Redona ED (2007). Assessment of genetic diversity of Philippine rice cultivars carrying good quality traits using SSR markers. Breeding Science 57:263-270. PDF

  • Lopez SJ (2008). TaqMan based real time PCR method for quantitative detection of basmati rice adulteration with non-basmati rice. Eur Food Res Technol 227:619-622. PDF

  • Siwach P, Jain S, Saini N, Chowdhury VK and Jain RK (2004). Allelic diversity among Basmati and Non-Basmati long-grain indica rice varieties using microsatellite markers. J. Plant Biochemistry & Biotechnology 13:25-32. PDF

  • Steele KA, Ogden R, McEwing R, Briggs H, and Gorham J (2008) InDel markers distinguish Basmatis from other fragrant rice varieties. Field Crops Research 105:81-87. PDF

  • Woolfe M and Primrose S (2004) Food forensics: using DNA technology to combat misdescription and fraud. TRENDS in Biotechnology 22(5):222-226. PDF

  • Quality Standardization of Indian Basmati Rice Exports. (1999) ASIA-PACIFIC BIOTECH NEWS (APBN) 3(18):431. PDF



Patents taken/applied

  • J. Nagaraju . An Indian patent has also been filed with PCT for DNA markers, which distinguish traditional Basmati, evolved Basmati and non-Basmati rice varieties. (Patent No 260/MAS/2002, dated April 8, 2002)

  • J. Nagaraju . The US patent has been applied for multiplex Simple Sequence Repeat kit containing 10 loci which can simultaneously distinguish traditional Basmati, evolved Basmati and non-Basmati varieties and quantify the adulterants (File No.FPO2559/RB/SM dated 19.04.2006)

  • J. Nagaraju. High-throughput multiplex microsatellite marker assay for detection and quantification of adulteration in Basmati rice (Indian Patent No.260/MAS/2002 and 662/CHE/2006; USA Patent No.USPTO 10/357, 488 and 11/406, 257; International Patent No.PCT/IN06/00254)