Miscellaneous Links
Databases
Tools
Computational Resources
Websites
Journals
Popular Resource Pages
Miscellaneous Databases
Cancer Genome Anatomy Project
HUGO's Human Gene Nomenclature
GeneCards
- database of human genes
Gene Ontology Consortium
- a controlled vocabulary of eukaryotic gene roles
ACUTS
- compilation of Ancient Conserved UnTranslated Sequences
UTR database
ENZYME
- enzyme nomenclature database
BRENDA
- enzyme database
TC-DB
- comprehensive classification of membrane transport proteins
The SNP Consortium
HGBASE
- database of sequence variations in the human genome
MethDB
- DNA methylation database
ISIS
- intron sequence and information database
SpliceDB
- canonical and non-canonical splice site sequences in mammalian genes
InBase
- intein database
The I.M.A.G.E. Consortium
The Dragon Database
- batch retrieval and visualization of diverse information about genes
The Kabat Database of Sequences of Proteins of Immunological Interest
Nelson Lab: Cytochrome C
REBASE
- restriction enzyme database
Chemfinder.com
- molecule database
Miscellaneous Tools
Repeatmasker
- mask repetitive elements in DNA sequences
Tandem Repeats Finder
EST parser
- find alternative polyadenylation sites in mRNAs, using ESTs
UTR-extender
- extends missing ends of an mRNA using EST and genome sequence data
CpG Island Searcher
NetStart
- prediction of translation start sites in vertebrate and A.thaliana sequences
ATGpr
- prediction of translation start sites in cDNA sequences
SignalP
- secretory signal peptide prediction
PSORT
- prediction of protein sorting signals and transmembrane helices
CBS Prediction Servers
- prediction of protein subcellular localization and various sites in protein and nucleotide sequences
SeqVISTA
- A graphical tool for sequence feature visualization and comparison
Compute pI/Mw Tool
Translate Tool
Reverse and/or complement DNA sequences
Melting
- calculate melting temperature for nucleic acid duplexes
bend.it
- calculate curvature and bendability of a DNA sequence
webcutter
- detect restriction enzyme cutting sites in DNA sequences
Primer3
- pick primers from a DNA sequence
Verbumculus
- find over- and under- represented words in sequences
EMBOSS
- The European Molecular Biology Open Software Suite
Computational Resources
W3C
- World Wide Web Consortium, definitive reference for HTML and other WWW stuff
Apache web server documentation
PHP information
Web Developer's Virtual Library
- encyclopedia of web design tutorials, articles and discussions
HTML Writers Guild
CPAN
- PERL modules
bioperl
- bioinformatics related PERL modules
C++ Standard Template Library Programmer's Guide
C++ Annotations
Dinkum C Library Reference
GNU C Library Reference
C Tutorial
Java Tutorial
Numerical Recipes in C and Fortran
R
- statistical computing language
Matlab Documentation
Dictionary of Algorithms, Data Structures, and Problems
The Linux Cookbook
Alphabetical Directory of Linux Commands
TOP500
- list of the world's top 500 supercomputers
kernel-machines.org
Web Sites for Background Information & News
International Society for Computational Biology
BiotechFind
Futurebiojobs
Funding Opportunities
DOE Human Genome Project Information
National Human Genome Research Institute - NIH
Genome Hub @ NHGRI
HUGO
- The Human Genome Organisation
Bioplanet
Bioinformatics.org: The Open Lab
Bioinformatics Web
- a good overview of the field along with many links
BioNews Bioinformatics Forum
MIT Biology Hypertextbook
Online biology textbooks
Biochemistry online textbook
Cell Biology online tutorials
The Bioinformatics Resource
BioTech Life Science Dictionary
Amino Acid Information
- everything you could possibly want to know about amino acids
Worthington Enzyme Manual
Protein Family Databases
kinase.com
- "kinomes" of human and some other organisms
PROW
- Protein Reviews On the Web
Cytokines Online Pathfinder Encyclopedia
RAMBIOS
- database of molecular biological review articles
GENE QUANTIFICATION web page
- info on PCR and other methods for gene expression analysis
International Union of Biochemistry and Molecular Biology nomenclature
Basal Transcription Factors
On-line Medical Dictionary
Finding Unusual Words in DNA Sequences
NIST Statistics Handbook
Classic Articles in Computational Biology
www.google.com
- recommended web search engine
Journals
Medline / PubMed
Web of Science search
NEC Research Index
Bioinformatics
Pacific Symposium on Biocomputing On-line Proceedings
Popular Resources
NAR database list
NAR web server issue
GenomeNet
BioBencHelper
SoftwareSeek
- lots of downloadable software
GenomeWeb
Chris Smith's links
Amos' links
ExPASy Proteomics tools
Atelier Bioinformatique
Biology WorkBench
BCM Search Launcher
MolBiol.Net
BMERC
Linux Links
BioLinks