Miscellaneous Resources. CDFD

Miscellaneous Links

Miscellaneous Databases

Cancer Genome Anatomy Project
HUGO's Human Gene Nomenclature
GeneCards - database of human genes
Gene Ontology Consortium - a controlled vocabulary of eukaryotic gene roles
ACUTS - compilation of Ancient Conserved UnTranslated Sequences
UTR database
ENZYME - enzyme nomenclature database
BRENDA - enzyme database
TC-DB - comprehensive classification of membrane transport proteins
The SNP Consortium
HGBASE - database of sequence variations in the human genome
MethDB - DNA methylation database
ISIS - intron sequence and information database
SpliceDB - canonical and non-canonical splice site sequences in mammalian genes
InBase - intein database
The I.M.A.G.E. Consortium
The Dragon Database - batch retrieval and visualization of diverse information about genes
The Kabat Database of Sequences of Proteins of Immunological Interest
Nelson Lab: Cytochrome C
REBASE - restriction enzyme database
Chemfinder.com - molecule database

Repeatmasker - mask repetitive elements in DNA sequences
Tandem Repeats Finder
EST parser - find alternative polyadenylation sites in mRNAs, using ESTs
UTR-extender - extends missing ends of an mRNA using EST and genome sequence data
CpG Island Searcher
NetStart - prediction of translation start sites in vertebrate and A.thaliana sequences
ATGpr - prediction of translation start sites in cDNA sequences
SignalP - secretory signal peptide prediction
PSORT - prediction of protein sorting signals and transmembrane helices
CBS Prediction Servers - prediction of protein subcellular localization and various sites in protein and nucleotide sequences
SeqVISTA - A graphical tool for sequence feature visualization and comparison
Compute pI/Mw Tool
Translate Tool
Reverse and/or complement DNA sequences
Melting - calculate melting temperature for nucleic acid duplexes
bend.it - calculate curvature and bendability of a DNA sequence
webcutter - detect restriction enzyme cutting sites in DNA sequences
Primer3 - pick primers from a DNA sequence
Verbumculus - find over- and under- represented words in sequences
EMBOSS - The European Molecular Biology Open Software Suite

BioLinks