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SilkSatDb: The First Comprehensive Database on Insect Microsatellites

 
Silkworm Biology















Mapping of microsatellite markers on to the silkworm ge

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PrimerBase



Accession No.

Locus

Repeat motifâ€(tm)s

Primer sequence

MgCl2

(mM)

T (ºC)

Allele size

range (bp)

AB002270

Bmsat001

(gt)5 (gcgt)7 .. (gcgt)7 (gt)10 .. (gt)13 .. (gt)7

gaaaccgcaactgtctatac
gcagataagcacaacgaga

4.0

52

208

D16230

Bmsat002

(ac)9

ccaacgtgaatctgatggtc tatgctcgtctgcctaga

2.5

50

450

D30733

Bmsat003

(ta)13 .. (ta)2 (cata)2

gaagcgagctgtagtagaga cgtgggtgatagtgacagc

4.0

50

443

D66906

Bmsat004

(gt)3 .. (at)2 (ga)8 ..(gagt)2

gcagatctatctaccttgg ctctcccattctcttctatc

2.0

50

187

U07847

Bmsat005

(at)2 (ga)6 .. (gagt)2

tggatggagtgtgtgaat gtagaaggatgtaccg

2.5

45

214

D38414

Bmsat006

(ca)8 .. (ca)4 (ta)2 (ca)2 ..

(ca)4 .. (ca)3 .. (ca)12

ggacagaggtggagact cagattccgtcaggcta

1.5

50

370

X05086

Bmsat007

(tca)9

tcttcttctcgctctgg ccttttctgccttcacg

2.5

47

177-204*

X05086

Bmsat008

(taa)3 .. (taa)13

gtgaaggcagaaaaggac cgcaccaactaaggcacg

2.0

47

275-350*

X66164

Bmsat009

(at)5

acgcattgctgcttcacatc ggccgatgtactggccaa

1.5

52

383

X05086

Bmsat010

(cagc)18

ggtaccagccagccagcc ccagagcgagaagaagaaa

2.5

62

137-220*

AF005384

Bmsat011

(gt)2 .. (gtt)4 .. (gc)2

caagatgtccaagagtg ccggtgagagggacctt

2.0

46

150-225*

D14168

Bmsat012

(gat)2 .. (gat)4 .. (gat)

gttgggacacccacctga ccagaaccatttgtcctct

2.0

48

134

X58451

Bmsat013

(ct)2 .. (ct)9.. (ca)3

ctaggctacaacaccgct accgaagaagacatgga

2.0

58

360

X17219

Bmsat014

(at)9

gcaagccaccagttagatatgg cacgtacgttgcgttcaccg

3.0

68

210-220*

D49948

Bmsat015

(ca)3 .. (ca)5

acgcagacgagaagctcac actgcaccgtatatgcga

2.0

48

200

Z26887

Bmsat016

(gt)7 .. (gt)4

actagtggtcgttcagg gcaaacactttgtacccc

3.5

46

350-375*

M24371

Bmsat017

(tta)8

gcgctcagcagtgcagta gcagtaggcacttggaag

2.5

42

282

D49370

Bmsat018

(cta)2 .. (cta)5

agcgcacccttatgacgat gaaagtggaagtcgtgtact

3.0

48

217-230*

X58445

Bmsat019

(aat)2 .. (aat)4

gtcaatcggatgcatggt ttaacgtggcgtgactgt

2.5

48

120

AB002280

Bmsat020

(tta)5

ggttgcatttacatcgac cggtgtgtgatgcatgat

2.5

46

175-200*

AB017362

Bmsat021

(t)10

tgtttcttacttcgtcc
tgcatgtgaattcatgg

2.5

43

206

D12523

Bmsat022

(cat)7

ttgacctacacggctgataa caattgaatcggaacgatgc

2.0

53

191

D90454

Bmsat023

(ggc)6

tgcgatgtctacatggtgg gtctctcgatagcttcct

2.0

54

183

U06073

Bmsat024

(cg)2 .. (gc)2 .. (tgc)3

gatgttcttatgcctggac tacatgatgttggtgtcg

2.0

50

221

AB013386

Bmsat025

(att)5

gcagagtctgagcagaatcatc tcaatcatacatgtggccaa

2.0

54

154

AB010579

Bmsat026

(att)5

tggtaaggtgagatatgt ccacaatgaagtcagcatc

1.5

46

159

D84396

Bmsat027

(aat)3 .. (aat)3

cgatccactttactggttga ctatagactgcgtaaaggctg

2.5

56

150

D76418

Bmsat028

(gt)2 .. (gtt)4 .. (gc)2

ggttcagtctctaagactc acgtgtcggcacgtgtcta

2.5

53

179

AB002280

Bmsat029

(att)5

acgctgttcgtatgagtgt tcggtgtgtgatgcatgat

2.5

50

200

U49854

Bmsat030

(taca) .. (taca)4

tacgagttccagcattacc gattcaaggtaaagttccc

2.0

49

167

X54734

Bmsat031

(ttttc)4

cagaggcaacgcttcatgct tcagaatcaatgtgcgtc

2.0

49

184

X58450

Bmsat032

(aatg)5

gctacaatggcgctggtc gagctctttactgcaact

2.0

47

187

X04226

Bmsat033

(aaac)4

tcatcaggtacaatgtcgg cagacttcgtagtgcctc

2.0

56

152

U16320

Bmsat034

(cta)4

tgagcatatgagcagtgg ggacctctggctcgacag

2.0

49

179

U16274

Bmsat035

(tatgt)3

gtggattgagatgaaatgg acctactatttggcgaagc

2.5

56

199

M24370

Bmsat036

(tac)4

tgacatacttcactgagga gacgctcaaagtagtaacg

2.0

49

171

LO8106

Bmsat037

(aaaat)2 .. (aaaat)2

tgtcatactgtacgagac tggtgataactacccgtg

2.0

49

135

D10742

Bmsat038

(tttg)4

gccaactaaggtctaaggg gtccagtagtttcggagcc

2.0

56

179

D10742

Bmsat039

(tta)4 .. (tta)2

cacttcctctggaatgttc cagcacaagggtatcggt

2.0

49

181

AF401615

Bmsat040

(tg)14 .. (tg)7

gcgcactacaaaataccat tcacgacggcaatcgaat

2.0

49

132-141**

M64336

Bmsat041

(gt)6

gcgcacaacatcccttt gcaaccgtatcctcaac

2.0

49

192

D86212

Bmsat042

(ga)7

agctcacctactagttaagg gttttgagtgtgcaatcaag

2.0

52

143

AB010579

Bmsat043

(ct)13

ctcttagcgataagaccac aactagactcgtccttcaa

2.0

57

160

AF226688

Bmsat044

(ct)9

gcacagcgaatttgtct atggtagtgcaagatag

2.5

47

154

AF049237

Bmsat045

(ct)12

gtcctaccaccagtaaga cgaatactccttacattac

2.0

54

150

AF242200

Bmsat046

(tg)7

gtattgaatccctgatg
ggtttggctcgtaggta

2.0

50

191

AB048355

Bmsat047

(tga)5 .. (tga)2

tcggtgttcgcatgaat gtgatgataacatgaaccc

2.0

54

163

AB042615

Bmsat048

(aat)3

acatacagggtctggtc cccatgtcccttaccaa

2.5

47

133

D84395

Bmsat049

(atttt)3

cgttgcttagatgggtggac ctccatgtaaccaccttaac

2.0

48

166

AB048544

Bmsat050

(attt)5

tcgaactgttgatgctg
tggtgacatctgccat

3.0

57

104-115**

AB046668

Bmsat051

(ca)11 .. (ca)6 (cg)2 (ca)11

tcagaactgcgaataat tcggatgtcggtaagaa

2.0

45

222

AB005911

Bmsat052

(a)18

atcgcatcttcagcacac catacgtatcaaagaccg

2.0

48

213-219**

AB007832

Bmsat053

(t)9

agcaacaagtgatagaa acctatcaactaatttg

3.5

43

211

AB010381

Bmsat054

(a)11

gcctctcaagtctatcaac caaatcagttgcgttgg

2.0

48

138

wdS00791

Bmsat055

(taa)7

ggcgtaaatccgcatatct gtttgtgtgctgactattg

1.5

50

119

wdV40873

Bmsat056

(att)6

gttttgtgcgcatacaca gcagaagacagttgtgtcta

2.0

52

149

wdS00713

Bmsat057

(att)6

agcacacgatcttagctt aatacctatgtaacgccg

2.0

48

197-230*

wdS20977

Bmsat058

(aat)7

cacaggcttagccctccaagt atcaccacgttctagatcacgg

3.5

64

149

wdS30456

Bmsat059

(tca)13

gtatgaggcggtatgaggct aatcctgctcagtggcgaac

2.0

48

141

wdS00614

Bmsat060

(atg)5

tgattcgagccctgcacc gttgacaatcaatggtact

2.0

46

180-200*

e40h0235

Bmsat061

(cat)12

tcgtatgaggcggtatgag cagtggcgaacaattggag

2.0

57

130-140*

e40h0082

Bmsat062

(tac)3 .. (tac)2 .. (tac)3 .. (tac)7

cggaacgttttctgcgatga catgttcgttgccagctcg

2.0

57

150-200*

wdV40875

Bmsat063

(ta)10

catacagttcattggagtccg tcattcaccaatagtgctg

2.0

54

140

fbVm1170

Bmsat064

(ct)8

gtgtacttctgtctgtt
tgtcatgtgaaaccgctc

1.5

46

96

wdS30252

Bmsat065

(tca)7

aatcgatcgagcaaggat tagttagcctcttctagc

2.0

46

100

wdV40538

Bmsat066

(ta)7

cagtgaataacacgcccaga ttctacgtcaggcacgagt

3.0

46

148-215*

brp-1248

Bmsat067

(gt)16 .. (gt)5

cgcgcactacaaaataccattac gagtttttctttcgatcaccgc

2.0

60

175-200*

wdS00905

Bmsat068

(tg)19 .. (tg)5

cgcactacaaaataccattactgac tgtcacgacggcaatcgaatcgac

2.0

54

130-159*

wdV40846

Bmsat069

(cta)7

gaacttccaaatcgacggacct ccttttgaacaaagcaaaaccc

2.0

60

170-185*

wdV40419

Bmsat070

(attt)10

accctctacgtagtatatg cagcctttttcagggctaa

2.0

54

107-148*

wdS30478

Bmsat071

(tca)13

ggtatgaggcttagcattgt agaggcctatgtctatcagt

1.5

55

105-115*

wdS30065

Bmsat072

(gct)4 .. (gct)5

tgagaagctgtcgtcaatg catcgtcagattcagagtctt

2.5

58

139

wdS20939

Bmsat073

(ggt)4 .. (ggc)3

gggaataataggtctactcca cgattagaatcgacctcct

1.5

52

119

wdS00913

Bmsat074

(gac)5

atgccagaaagccgctatcg ccgatgagattgttaaggttg

2.0

58

123

wdV40875

Bmsat075

(ta)10

catacagttcattggagtccgt cgaagtttgtatgtcaagattcg

2.5

62

216

wdV40261

Bmsat076

(cga)4

tgaatttttgtcgtcttggt cacacgtgttcgttcgca

2.5

52

99

wdS20869

Bmsat077

(tgc)7

ctaaaccagcagctcctaag tgcagtgggagctgatgcagtt

2.5

58

136-400**

wdS20816

Bmsat078

(cta)7

gaacttccaaatcgacggacc catgtaaccttttgaacaaagc

2.5

57

178-189

wdS20525

Bmsat079

(tgc)7

ccaaacctgctgccgcaaag aggtttagcactagacttag

2.0

61

148

wdS00952

Bmsat080

(ga)6 .. (ca)2

gttagttacatacgcacttg cacgagatccgtgtccata

2.0

57

119

mg--0950

Bmsat081

(att)5

ctcaagtgcttatactg ccgtcacaatacaatacg

2.0

50

172-180**

wdS00938

Bmsat082

(acc)5

acttgctaatcggttcac
caaagctggatccgctc

2.0

50

108

wdS00877

Bmsat083

(aat)4

gtgattggacgcata
gtcgcatgagttacg

3.0

51

180

br--1625

Bmsat084

(att)6

gactgattacgtactcttc tagtgttccccgtatca

2.0

50

104

e96h0097

Bmsat085

(acc) .. (acc)5

catacgagcctacacttg ggtattggactaccaaac

3.0

48

132

br--1609

Bmsat086

(ta)2 (tga)2 (taa)5

atctggaatcgcctaa
tagcacaactgccgta

2.0

48

83

fbVf0297

Bmsat087

(att)4

gcgctgtttgggttat
tcaatcgtacagcagtg

2.5

50

187

mg--0848

Bmsat088

(at)10 .. (taa)2

ctaagtacgtgtacgga cgtccagaattgtgacc

2.5

50

154

mg--0501

Bmsat089

(tc)6 .. (tc)2 .. (tc)11 .. (tc)3

ccgcatctagtagaattatc ctacatgaagcggaatgtc

2.0

48

222-230**

msgV0119

Bmsat090

(tgc)7

gactactactagaactgc ctgatggctccaacaaa

2.0

48

164

wdS30649

Bmsat091

(tgc)5

ccataactggacagcaagg cttggatatgcactgctggt

1.5

54

146

fbVm0326

Bmsat092

(tat)8

acagaaaggtcaagatg gcgccatgtgcaatttag

1.5

50

209-214**

fbVm0438

Bmsat093

(tc)8

ctcaatacatttacctcggc ttgtgccagtctgtccag

1.5

50

164

wdS30377

Bmsat094

(tat)5

tctgaccaatctgccttg attataggacaggacatacc

1.5

50

168

Genomic library

Bmsat095

(ga)23

attgtaaccgatttgagaga attcgcacaataagttcact

3.0

46

107-122*

Genomic library

Bmsat096

(gt)10

cataataaataaataataat tgtagtgggatagtcagtat

3.0

42

108-114*

Genomic library

Bmsat097

(gt)9

aacagatgctgcggactggt tgccattcacaatacaacat

2.0

50

135-162*

Genomic library

Bmsat098

(gt)8 (gt)5

gaatgttctgctggtgg taatgtttttatactttattatatg

3.0

45

109-162*

Genomic library

Bmsat099

(ca)11

ctttcgatcaccgcgttctc cgctacgaaataccattatctgaca

2.5

55

130-176*

Genomic library

Bmsat100

(ca)10

aatgcagaatcgtaattttt tttgaccacagacaataagc

2.0

45

98-158*

Genomic library

Bmsat101

(ga)12

ggtcccttgaaactgcgat cagagacctgccggttgtcgtt

2.0

53

121-168*

Genomic library

Bmsat102

(ct)9

gctcgccatatgcaatcctc cgtcattgccttcatttcagttc

2.5

53

143-186*

Genomic library

Bmsat103

(gt)22 (gt)7

acgcgctctacaaaataccatta gatcaccggttctgctctcg

2.0

53

130-190*

Genomic library

Bmsat104

(gt)5 (tgcg)6 (ta)2

cgcaattctgtattagataa taaaggtattattcttattcg

3.0

46

134-223*

Genomic library

Bmsat105

(ga)12

tcacatattatttacaagac gttgactgttttgtttta

2.5

42

107

Genomic library

Bmsat106

(ca)7

tattgaggtgcgatactttg cgtcggactcttgaatggta

2.0

49

106

Genomic library

Bmsat107

(gt)14

cgtgtgaactccaagaggtc
cacagtcgaaccccggtatg

3.0

46

115

Genomic library

Bmsat108

(gt)10

caataaatgcttacgagtttaa tatcggtagttccttgactt

3.0

47

175-187*

Genomic library

Bmsat109

(gt)9

caaaagttgtgacaataaat agaatacagagaagaagtgc

3.0

45

161

Genomic library

Bmsat110

(ta)4 .. (ta)4 .. (gata) .. (gata)3 .. (gata)3 .. (gata)3.. (gata)11

tagcgagactaacgaacag tactgatagcgtggcctat

2.0

58

90-185*

Genomic library

Bmsat111

(aat)8

gtatgctcgtctgccta ctagttcttgtgaattggc

2.0

58

286

Genomic library

Bmsat112

(ga)14

gtacctttcgatccgatt
ttgaaacctgcgagaccg

2.0

56

160

Genomic library

Bmsat113

(gat)3 .. (gat)4

gtcgttgtggcctaaagg gattctagactcggtgatg

2.0

53

182

Genomic library

Bmsat114

(acag)4

agtctcgtcgaaatcggt gacgtatctcctgagtaa

3.0

58

224-238**

Genomic library


Bmsat115

(ataat)2 .. (ataat)

tgccgagtattcaatgac

cgtcatctaccgttcaca

2.0

58

304

Genomic library

Bmsat116

(at)6

gggccaccagtaatctttca cgtgttgccgtggtaaaa

2.0

52

192

Genomic library

Bmsat117

(at)22

ggccaccagtaatcttt

tttgtggccagcattct

2.0

56

250

Genomic library

Bmsat118

(tttga)6

caggacggaggctaattc aggaggatcatctacctc

3.0

50

180

Genomic library

Bmsat119

(tcaaa)5

ctaaacatggcggattttcg aattcttgtgaattggcgg

4.0

54

164

Genomic library

Bmsat120

(ttca)6

gagaattacaacttcgcgcc gcagtaatgcgtttcggttt

2.0

58

214

Genomic library

Bmsat121

(at)6

ccgttgtaactatactgagac gagctggtatagacatagttc

2.0

52

272

Genomic library

Bmsat122

(at)4..(at)20

gacggcaccattcatcat tgtcctaccaccagtaataa

3.5

64

274

Genomic library

Bmsat123

(acttt)2..(acttt)

gcattatgcacttcatctc gtcggtttacacagtcag

2.0

56

293

Genomic library

Bmsat124

(tc)9

aaacggctgtctggaagaga acttttgatcacgagcgacc

2.0

60

242-254**

Genomic library

Bmsat125

(acaa)4

tcgggaatagtgtagcctcc aagcgtgtacctgctaccgt

2.0

54

168

Genomic library

Bmsat126

(gctga)3

gtgatagcccattcccaag tgtttacgacccaagccag

2.0

50

252

Genomic library

Bmsat127

(tttga)4

aggcttagtgacgagccgt ggtgccaatcattcttatt

2.0

50

193

Genomic library

Bmsat128

(taa)11

ggacaagaccttcagtaatg

cgtgaatctgatggtcgatt

2.0

58

182

Genomic library

Bmsat129

(at)27

agttacccaggttgtctt cgacactggttctcatac

2.0

50

198

Genomic library

Bmsat130

(tttga)6

gctagttcttgtgaattgg ttgatgcgcacgattcaa

2.0

50

176

Genomic library

Bmsat131

(ca)4..(ca)2..23

cttccagacaaccattagat cagcatccatccttatttat

2.0

49

95-329*

Genomic library

Bmsat132

(gt)10

gatcgaactacgcaattacg cagcatccatccttatttat

2.0

49

95-329*

Genomic library

Bmsat133

(ca)5(ta)7

attgcctcggacaggagtg taacggctgtcctcaca

3.0

53

111-194*

Genomic library

Bmsat134

(ca)10

ttcccacatttatagagaa ttgaccgcagactgataaac

4.0

45

179

BAAB01018290|contig141109

Bmsat135

(tga)9

tgtccagcagtggacgac agcttaagcgtgattgtg

2.0

50

176

BAAB01105443|contig474882

Bmsat136

(ca)2..(ca)21..(ca)2

cacgcatagatgcagata ggactagtgttgagagat

2.0

50

180

BAAB01029913|contig167846

Bmsat137

(acaa)5

cgtcgtagagtgagga gatgttagcatcaacatgg

2.0

50

143

BAAB01213190|contig99796

Bmsat138

(aata)7

ttgactggtagagaatgc ctccttgatgtgtaggtg

2.0

48

270

BAAB01200632|contig77136

Bmsat139

(atc)3 .. (atc)3

gcaggttggaagcaaata gtcgaattggcatgttag

2.0

58

239

BAAB01124980|contig517651

Bmsat140

(at)7

ccgatcaaatgcaactcg tgtcctacggcatgagat

2.0

52

206

BAAB01124980|contig517651

Bmsat141

(ttta)3 .. (ttta)2

agtcgacactcggttc
gcatgcaatcgccatta

2.0

50

163-175**

BAAB01124980|contig517651

Bmsat142

(tcaaa)6

caaatttattggccgaagc ccaattcttctcaggacg

2.0

48

258

BAAB01209644|contig92070_499193

Bmsat143

(aatca)3

gctggatgctccatatca gcggtagttctttttgacg

2.0

52

275

BAAB01052463|contig232141

Bmsat144

(tatt)6

cgaacttatcacgggac
tggattttgatgcggtt

3.5

60

125

BAAB01090804|contig443419

Bmsat145

(ga)16

tgtgcaggtacacataac ggaacactacttatctgc

2.5

50

217

BAAB01084331|contig429385

Bmsat146

(tta)6

gtgcacttcttctctatac tcatcggctcaaaaatgg

2.0

52

179

BAAB01207215|contig86726

Bmsat147

(taa)5

tgtcgcatgtcgctatgt atgggatgttacgacagt

2.5

50

179

BAAB01122516|contig512178

Bmsat148

(atgaa)3

ggtaactgagacctttaagtc ttctcgggatcctccaaaa

2.0

50

225

BAAB01206307|contig84770

Bmsat149

(tttg)5

gtttctgcagccatctatac tcggtccagtagtttcggag

2.0

64

98

BAAB01111041|contig48674

Bmsat150

(tttg)4

gcgtcaaatacatggtatg agtagcctatgttcatcag

2.0

68

252

BAAB01069075|contig33452

Bmsat151

(tcatt)3

gaccaccattttactgag gagattttatgacctgg

2.0

53

185

BAAB01065234|contig29382

Bmsat152

(ttatt)2 .. (ttatt)2

ggaacagatgggtcgagt gcgatattgacagaggaaac

2.0

50

289

BAAB01058098|contig252179

Bmsat153

(aataa)3

gaactatatctcaaggtgg tctgatatttccgtgggac

3.5

60

182

BAAB01105957|contig475994

Bmsat154

(gtca)3

atggcggtacgtggaca aggttccgtcatcgctt

2.0

68

237

BAAB01065887|contig298552

Bmsat155

(ga)6

gctacaataaccgaacc atttcgcaaagacggatg

1.5

51

201

BAAB01028768|contig16506

Bmsat156

(tttg)4

acgcacggctccatacaag caaatcggcctctagtttcg

2.0

53

199-205**

BAAB01139681|contig550441

Bmsat157

(aataa)3

ccaccgctcacaaaatg cccgtgtttataagctc

2.0

48

162

BAAB01059462|contig258484

Bmsat158

(acag)5

agtcccgtcaaaatcggt ggtccgagtagacgaga

2.0

56

227-253**

BAAB01085129|contig431073

Bmsat159

(attt)4

tgcttactaacgaacgag caaggacacctcaagacc

2.0

56

143-350**

BAAB01085129|contig431073

Bmsat160

(gt)6

tgttacagatttcgccaag gataagaagtgcacaatgc

2.0

50

280

BAAB01105083|contig47407

Bmsat161

(ta)6

ctcacccattttcagccaa tgtgattgctcgtaggcaa

3.5

54

96-264**

BAAB01144887|contig56244

Bmsat162

(tc)14

agactcacatgacttccg ggcctcttcgttgtagtc

2.0

50

192

BAAB01206941|contig86101

Bmsat163

(gtgaa)4

tggcttaacgcatgcag catactcgtcgaagtttag

2.0

50

220

BAAB01200632|contig77136

Bmsat164

(tga)3 .. (tga)3

gtcgaattggcatgttag cgcaggttggaagcaaat

2.0

54

240-246**

BAAB01029678|contig167264

Bmsat165

(taaa)9

gaggtgacatctgccatga aagcagaattgcctccgtt

3.0

46

168

BAAB01101933|contig46717

Bmsat166

(cata)5

tgccttgcttggagattgtc gacttccgaagtagagaaac

2.0

50

250-262**

BAAB01088072|contig43739

Bmsat167

(at)5 .. (tttag)3

agtacctgtcaggaacag gtcatgtcggattcgaac

2.0

53

176-198**

BAAB01050189|contig224869

Bmsat168

(tttta)3

catctgctcacttcactg

gcacatattggaatggttg

2.0

50

174-180**

BAAB01155838|contig588365

Bmsat169

(gcgac)3

gtgcgtctcggttatcaag ttgatattccgcttgggaag

2.0

56

114

BAAB01143396|contig558840

Bmsat170

(t)53

tgctgtcgtctgcttcctaa cacggtgctgactgttgttt

2.0

68

173

BAAB01203821|contig80120

Bmsat171

(gact)5

gtagactccgtaacgccacag cagtttcgttgcacataccga

2.0

68

150

BAAB01198206|contig75537
BAAB01208870|contig9043

Bmsat172

(tta)7

agggatgatgggtaaagagc gcagtaggcatttggaaggag

3.5

56

272

BAAB01210011|contig92835_499956_514492

Bmsat173

(cga)5

ctccttatccatccgttt ctctcggatcatagatacg

3.0

50

158

BAAB01076457|contig412663

Bmsat174

(tatt)6

atctggtgctcaaaaacgga cggaaccaaacaagaacgat

3.0

58

166

BAAB01092818|contig44762

Bmsat175

(ta)7

cacacaatggtgacggta ccaaatgatgcaaatggtga

2.0

50

219

BAAB01211215|contig95449

Bmsat176

(tct)4 .. (tct)2

tgtcgtcggtatttacg ctcatgccaaatgcctatg

2.0

52

153

BAAB01062917| contig277816_157471
BAAB01151996|contig578958

Bmsat177

(atgt)5

gctcataaacccatcggtc tatcgcgtggtattgtga

2.0

50

191

BAAB01093604|contig449288

Bmsat178

(ttc)4 .. (ttc)2

gattacgtgatcgtaaacag tgataagaggacatgctgcg

2.0

52

134

BAAB01023035|contig151924_152396

Bmsat179

(atttg)6 .. (atttc)2

gccaattcttctcaggac gttccaaatatgagctcca

2.0

52

244-252**

BAAB01181088|contig67198

Bmsat180

(tat)5

tcactacgtgaaatccgcc tgttccggaattacagcg

2.0

52

251

BAAB01058494|contig25403

Bmsat181

(tcaaa)6

ggtaggacctcttgttag aggacggaggctagttct

2.0

62

192

BAAB01014010|contig131431

Bmsat182

(tgtc)7

cgaccagctgattgacgc gcttatcccacattccat

2.0

50

211

BAAB01077392|contig414658

Bmsat183

(tgaaa)4

gtgacctggtaactaag

cgaacgtaacttctcgg

2.0

50

257

BAAB01091067|contig443974

Bmsat184

(taa)7

caggctatttcagctgctc gttaacgtggcgtgattgt

2.0

62

140

BAAB01031492|contig171692

Bmsat185

(tca)8

cttacaacacgccctgt
gctcagtggtgtagat

2.0

58

170

BAAB01022669|contig151118

Bmsat186

(tga)10 .. (tga)2

gtgctgtaatctaacttgagc gaaggcggaggaccacattat

2.0

50

150

BAAB01075356|contig410358

Bmsat187

(ag)11

tcatttaccatcaagcggc cttttagcgataagaccgc

2.0

56

181

BAAB01198554|contig757671

Bmsat188

(agca)3 .. (agca)2

gagactgtgaattgtcgct ggtcacgacgacttcagat

2.0

50

159

BAAB01105579|contig475208

Bmsat189

(tca)5

gtggcaaatgatcaacgtca aggcctatgttcagcagtgg

2.0

51

140

BAAB01064835|contig291385

Bmsat190

(tttg)3.. (tttg)1

cggggcgaagctagtataaa gcttcttactaggtacatgc

2.0

64

198-206**

BAAB01195258|contig73571

Bmsat191

(tga)5

ctactacaggcggcagttcc gctttggtgaatacatgggg

2.0

62

162

BAAB01129858|contig528417

Bmsat192

(aat)3..(aat)2

aaagcgtcaagtgtcacag ccggtgttgaaccaattct

2.0

50

146

BAAB01151603|contig578055

Bmsat193

(ga)6

caaggtagagggggaaga gccgtcatctcaacactca

2.0

50

105

BAAB01088018|contig43727

Bmsat194

(caga)5

cagccgttccagagattagc ctgacattgtatgaaactggc

2.0

52

219

BAAB01080053|contig420442

Bmsat195

(acat)3 .. (acat)3

attggcggacttaatgccta agcggaatcgtcatgaactt

2.0

54

266

BAAB01098684|contig460276

Bmsat196

(aata)4..(aata)3

ctcttaaagtcaatggcgg ctgctgcttgagatccagg

2.0

53

140-147**

BAAB01018290|contig141109

Bmsat197

(tga)9

ggcaagaagtggatgagga taggcattaagccattgcca

2.0

58

148

BAAB01078015|contig416024

Bmsat198

(tga)6

tggcagtaactggatgcgta aaaatgccctctttccccta

2.0

50

243

BAAB01123612|contig514496

Bmsat199

(ag)5 .. (ag)3

cgtggtaactagcagtgtg gcgataagaccgcctattgt

2.0

54

190

BAAB01123612|contig514496

Bmsat200

(ct)2..(ct)13

gaatttcgactaccgtggga ctactgaatatctgcgaagc

2.0

60

189

BAAB01098448|contig45978

Bmsat201

(gt)2..(gt)7

cactacgtattacggataag cactacctcgccttaatc

2.0

50

200

BAAB01098448|contig45978

Bmsat202

(att)6

ggagcctggagatcagtaa cgtgtttatccagcaatttcg

2.0

53

280

BAAB01133027|contig53559

Bmsat203

(ta)5 .. (ta)3

catcgctcactcccctctt ttagaccggaaattagccc

2.0

53

266

BAAB01058804|contig255497

Bmsat204

(taca)7

taatccgacgttttgaaggg ttaccagggaggactgga

2.5

53

171-179**

BAAB01086658|contig4343

Bmsat205

(aat)4 .. (aat)2

tcggcactagaccttttaca cgtgaaaccaattgaatgct

2.0

50

218

BAAB01086658|contig4343

Bmsat206

(attt)4

ttttgaatgtgcgagactgc gaagccactgccaccatact

2.0

50

108

BAAB01211171|contig95357

Bmsat207

(tatt)5

taacgtggcgtgatcgttag aacgacacgatattcctagtg

2.0

50

122

BAAB01141330|contig554243

Bmsat208

(tttg)4

ctggatctgtgcatgattcg gggacaatgtcggcttctaa

2.0

52

175

BAAB01100424|contig463975

Bmsat209

(aaata)3

ttacggaatataacgtgtcgg cctcgaatgctaatcatcagt

2.0

50

115

BAAB01151981|contig578938

Bmsat210

(tcaaa)4

ctagcggcaggcctagta cagttcttgtgaattggcg

3.0

50

117

BAAB01039970|contig192133

Bmsat211

(tttga)..(tttga)3

ggtagttgctttgacgttc gctcgtctgtctacaagg

2.0

54

108

BAAB01160042|contig59851

Bmsat212

(ga)15

ctcggttactaacttgaagc

cactcttaacgataagaccg

2.0

58

184

BAAB01121367|contig509723
BAAB01011909|contig12668

Bmsat213

(ctac)5

gtactcatcaactgctacga

tgtgagctcgtccacaaaac

2.0

55

183

BAAB01155602|contig587635

Bmsat214

(ta)20

acatgaaatgggcaaacgacg

gctcatatttgcttgccggtt

2.0

57

160-170**

BAAB01117810|contig501840

Bmsat215

(ga)21 .. (ga)3

actcaccattgggtagacgc

agtggataagtcgagcgat

2.0

56

173

BAAB01105707|contig475466

Bmsat216

(gt)9 .. (gt)12

gacagatttcgccaagaaag

gcggtcagaggagtatga

2.0

62

280

BAAB01059914|contig26054

Bmsat217

(gt)16

cgtcaaatcgatagtatcac

gctgaaataggcagggtggt

2.0

58

193

BAAB01207057|contig86345

Bmsat218

(tga)5 .. (tga)4

agtctcaatgggaaaaaccg

atgctcttcacgccatgag

2.0

59

154

BAAB01129204|contig527001

Bmsat219

(at)8

cggtcttctttaagcgtcc

ggaaggataccccgatcaat

2.0

59

288

BAAB01012872| contig128792_425575

Bmsat220

(aaac)4

gatccagtagtttcggag

cgtagctggaataccctt

2.0

57

198

BAAB01139084|contig549101

Bmsat221

(tttga)6

ccaattcttctcaggacgga ccattctttcatgaactcaaacg

2.0

50

171

BAAB01024429|contig155147

Bmsat222

(ct)3..(ct)2(cttt)2(ct)11

agctcagtccacaaacaaac atgtgtgcgttgcgaattag

2.0

50

230

BAAB01058804|contig255497

Bmsat223

(gtat)7

cggtcgaatttgtattaaccg tcgagttaatccgacgttttg

2.0

50

140

BAAB01142751|contig55745

Bmsat224

(ttg)8

gacgactccactataagcatac gttgtatcaagctggtagttc

2.0

58

178

BAAB01195937|contig740556

Bmsat225

(gt)3 .. (gt)2.. (at)3.. (at)4 .. (at)5.. (at)8

cgtatcgtaacgtacataac tcacaatacgccattccac

2.0

48

244



* Allele size range based on 13 strains of Bombyx mori


** Allele size range between two contrasting strains of Bombyx mori,


Where only one allele size is indicated, they are monomorphic between two contrasting strains of Bombyx mori


Copyright © 2004 All Rights Reserved, CDFD, Hyderabad, India